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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4298835_4300004_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4298835 - 4300004
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
ELLLDRSDLIDQMKTPEAIK
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.6
0.6
0.9
68.1
42.1
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
HELLS
Ensembl Gene ID:
ENSAPLG00000002649
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002725
4279332 - 4300102
20771