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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4326098_4335368_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4326098 - 4335368
Intron Length:
9271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCGC
5'SS Class:
strong_major
3'SS Sequence:
TCATGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
GGTAGGTTAACT
Flanking Amino Acid:
CGDELTLTVSRTESKVWSPL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
67.1
44.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
75.1
0.57
1
68.7
41.8
Minor 5ss
33.2
-1.9
3.1
44.2
43.6
Minor BPS
47.7
-0.1
2.4
70.37
45.9

Associated Gene:

Gene:
PDLIM1
Ensembl Gene ID:
ENSAPLG00000003394
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040059
4305282 - 4346821
41540
ENSAPLT00000003468
4305282 - 4345556
40275
ENSAPLT00000048359
4305282 - 4350123
44842