Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_432767_433054_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

432767 - 433054

Intron Length:

288

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGCAG

5'SS Class:

major

3'SS Sequence:

TGTTTTGCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

TTGTGCTGATCT

Flanking Amino Acid:

KRAMDFYDPKRHDDFDFISG

Intron Amino Acid Position:

566

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

62.4

43.6

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

78.4

0.64

0.9

73.9

36.8

Minor 5ss

30.2

-2.3

3.2

38.2

46.7

Minor BPS

51.2

0.12

2.2

76.69

45.7

Associated Gene:

Gene:

PAPSS2

Ensembl Gene ID:

ENSAPLG00000002394

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021910

430941 - 460321

29381

ENSAPLT00000002420

432625 - 459000

26376

ENSAPLT00000002419

432625 - 459000

26376