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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_433285_434194_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
433285 - 434194
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTTG
5'SS Class:
major
3'SS Sequence:
CTCTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTCTCCTTCACA
Flanking Amino Acid:
SPMLYAGPTEVQWHCRARMI
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
65.5
40.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
80.6
0.69
0.7
75.1
27
Minor 5ss
45.8
-0.4
3.2
63.6
48.1
Minor BPS
68
0.56
1.8
74.7
43.3

Associated Gene:

Gene:
PAPSS2
Ensembl Gene ID:
ENSAPLG00000002394
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021910
430941 - 460321
29381
ENSAPLT00000002420
432625 - 459000
26376
ENSAPLT00000002419
432625 - 459000
26376