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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4335521_4345460_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4335521 - 4345460
Intron Length:
9940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
TGTCTTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
AGTCCATTCACT
Flanking Amino Acid:
DFEQPLTISRVTPGSKAATA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.3
41.4
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
81.7
0.71
0.8
76.8
31.8
Minor 5ss
33.5
-1.9
3.6
41.6
45.3
Minor BPS
52.3
0.15
2.1
74.4
41.6

Associated Gene:

Gene:
PDLIM1
Ensembl Gene ID:
ENSAPLG00000003394
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048359
4305282 - 4350123
44842
ENSAPLT00000040059
4305282 - 4346821
41540
ENSAPLT00000035180
4331415 - 4345556
14142
ENSAPLT00000003468
4305282 - 4345556
40275