About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4349087_4349899_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4349087 - 4349899
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
MEKCDDGWFVGTSRRTRQFG
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.6
0.73
0.9
76.8
37.1
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
SORBS1
Ensembl Gene ID:
ENSAPLG00000003522
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003647
4349019 - 4383826
34808