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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4361774_4363110_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4361774 - 4363110
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTGTTGTTAACA
Flanking Amino Acid:
AKFDFKAQTLKELPLQKGDI
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
70.9
0.47
1.1
65.6
44.4
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
59.7
0.3
2.1
71.37
41

Associated Gene:

Gene:
SORBS1
Ensembl Gene ID:
ENSAPLG00000003522
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003647
4349019 - 4383826
34808