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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4363158_4364568_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4363158 - 4364568
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTGATCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTGATCT
Flanking Amino Acid:
DTAKRKSGSEMRPARAKFDF
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.3
80.5
35
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.1
0.65
0.8
71.1
39.9
Minor 5ss
47.6
-0.2
2.6
67.4
43.7
Minor BPS
62.7
0.48
1.7
84.13
36.8

Associated Gene:

Gene:
SORBS1
Ensembl Gene ID:
ENSAPLG00000003522
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003647
4349019 - 4383826
34808