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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4382114_4383482_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4382114 - 4383482
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACCTAA
5'SS Class:
major
3'SS Sequence:
TTTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGTGTTAATT
Flanking Amino Acid:
RSSSRKSSPERTDWEPPDKK
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.2
67.2
36.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
43.3
-0.7
2.9
55.3
48.9
Minor BPS
60.4
0.4
2.1
82.74
39.5

Associated Gene:

Gene:
SORBS1
Ensembl Gene ID:
ENSAPLG00000003522
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003647
4349019 - 4383826
34808