About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4383613_4383726_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4383613 - 4383726
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTACTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGTTCACTAACA
Flanking Amino Acid:
YSPRYSYSDDTRSQPSVPRS
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
82.5
29.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80.9
0.69
0.8
73.8
36
Minor 5ss
39.3
-1.2
2.9
53
39
Minor BPS
62.5
0.39
2
78.78
36.8

Associated Gene:

Gene:
SORBS1
Ensembl Gene ID:
ENSAPLG00000003522
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003647
4349019 - 4383826
34808