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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_443141_447454_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
443141 - 447454
Intron Length:
4314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCA
5'SS Class:
major
3'SS Sequence:
CTGTCTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CAAACCTGAACC
Flanking Amino Acid:
GFRGCTVWLTGLSGAGKTTI
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
33.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.2
0.48
0.9
66.3
34.5
Minor 5ss
46.6
-0.3
2.4
59.8
44.6
Minor BPS
58.5
0.24
1.5
62.71
41.8

Associated Gene:

Gene:
PAPSS2
Ensembl Gene ID:
ENSAPLG00000002394
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021910
430941 - 460321
29381
ENSAPLT00000002420
432625 - 459000
26376
ENSAPLT00000002419
432625 - 459000
26376