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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4574260_4574461_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4574260 - 4574461
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GTTTTCTTACTG
Flanking Amino Acid:
YVYYDTERIGVDLIMKTCFS
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
83.7
27.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
32.5
-2
3.5
48.7
47.5
Minor BPS
62.6
0.26
1.7
67.31
41

Associated Gene:

Gene:
EIF3F
Ensembl Gene ID:
ENSAPLG00000004385
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028489
4570991 - 4574990
4000
ENSAPLT00000004531
4570991 - 4575688
4698