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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4574847_4575610_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4574847 - 4575610
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TATTTCTGATCA
Flanking Amino Acid:
FETMLNSNINDLLMVTYLAN
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.5
0.64
0.7
76
26.1
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
60.4
0.32
1.7
73.29
38.2

Associated Gene:

Gene:
EIF3F
Ensembl Gene ID:
ENSAPLG00000004385
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004531
4570991 - 4575688
4698