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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4588523_4589674_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4588523 - 4589674
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTCTTTAATT
Flanking Amino Acid:
YGGGGPAQIPDYSGGQAPSP
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
72.9
0.52
0.9
70.2
35
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
84.7
1.17
0.9
92.55
29.6

Associated Gene:

Gene:
ANXA7
Ensembl Gene ID:
ENSAPLG00000004494
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004653
4587104 - 4597442
10339