About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4590736_4591064_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4590736 - 4591064
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
AAGCTCTTACAT
Flanking Amino Acid:
EILRKAMKGFGTDEQAIINV
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
69.4
0.44
1.1
67.1
43
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
48.4
-0
1.7
62.03
41.5

Associated Gene:

Gene:
ANXA7
Ensembl Gene ID:
ENSAPLG00000004494
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004653
4587104 - 4597442
10339