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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4592002_4593263_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4592002 - 4593263
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAC
U12 Branch Point Sequence:
TTTGCAGTTACA
Flanking Amino Acid:
DAWSLRHAMKGVGTQERVLI
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.1
37.6
Major BPS
55.1
0.13
1.2
66.7
40
Major PPT
78.7
0.65
0.8
71.5
33
Minor 5ss
40.2
-1.1
3.5
58.4
46.5
Minor BPS
45.3
-0.3
2.5
68.43
43.6

Associated Gene:

Gene:
ANXA7
Ensembl Gene ID:
ENSAPLG00000004494
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004653
4587104 - 4597442
10339