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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4595305_4596536_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4595305 - 4596536
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TACTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAATCCTAAAAA
Flanking Amino Acid:
GNVERGLKAILQCALNRPAF
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.9
0.74
0.8
77.7
35
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
61.8
0.37
1.8
71.13
40.3

Associated Gene:

Gene:
ANXA7
Ensembl Gene ID:
ENSAPLG00000004494
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004653
4587104 - 4597442
10339