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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4596650_4597319_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4596650 - 4597319
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
ATATGTTTAAGC
Flanking Amino Acid:
LIRIIVTRSEIDLVQIKQVF
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
52.1
0.05
2
65.11
40.8

Associated Gene:

Gene:
ANXA7
Ensembl Gene ID:
ENSAPLG00000004494
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004653
4587104 - 4597442
10339