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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4615584_4617683_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4615584 - 4617683
Intron Length:
2100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATATACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
TWSLPFVGEKVTEMLVNVLS
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.6
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
82.8
0.74
0.9
77.7
34.7
Minor 5ss
44.8
-0.6
2.6
56.4
48
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
PPP3CB
Ensembl Gene ID:
ENSAPLG00000005112
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005324
4602813 - 4645632
42820