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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4619649_4619746_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4619649 - 4619746
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTTTCTTTTACT
Flanking Amino Acid:
NTVRGCSYFYSYPAVCEFLQ
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
80.3
26.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
90.8
0.92
0.6
87.1
23.5
Minor 5ss
28.6
-2.5
3.4
37.8
47
Minor BPS
74.6
0.85
1.5
88.94
35.5

Associated Gene:

Gene:
PPP3CB
Ensembl Gene ID:
ENSAPLG00000005112
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005324
4602813 - 4645632
42820