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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4619887_4627225_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4619887 - 4627225
Intron Length:
7339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCTCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTCTCAAAC
Flanking Amino Acid:
EINTLDDIRRLDRFKEPPAF
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
77.7
0.62
0.9
74.6
34
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
68.2
0.55
1.6
79.83
34.7

Associated Gene:

Gene:
PPP3CB
Ensembl Gene ID:
ENSAPLG00000005112
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005324
4602813 - 4645632
42820