About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4628074_4631135_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4628074 - 4631135
Intron Length:
3062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTCAACA
Flanking Amino Acid:
YVDRGYFSIECVLYLWVLKI
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.6
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.1
0.7
0.9
77.7
35.5
Minor 5ss
37.5
-1.4
3.2
49
47.2
Minor BPS
67
0.53
1.5
75.9
35.2

Associated Gene:

Gene:
PPP3CB
Ensembl Gene ID:
ENSAPLG00000005112
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005324
4602813 - 4645632
42820