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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4631261_4633395_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4631261 - 4633395
Intron Length:
2135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
TMIEVEAPITVCGDIHGQFF
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
PPP3CB
Ensembl Gene ID:
ENSAPLG00000005112
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005324
4602813 - 4645632
42820