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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4657076_4657839_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4657076 - 4657839
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATCT
Flanking Amino Acid:
SMVGKARKPSGDQKNVIQKL
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.6
0.71
0.8
77.1
31.1
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
61.5
0.44
1.9
82.17
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028889
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027703
4656417 - 4664470
8054