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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4660811_4663358_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4660811 - 4663358
Intron Length:
2548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TTAACCATAACA
Flanking Amino Acid:
DSARYPFDQSVSANLNVRKL
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
90.5
0.91
0.6
84.4
30.5
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
68
0.56
1.6
78.7
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028889
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027703
4656417 - 4664470
8054