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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4683425_4684846_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4683425 - 4684846
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCAAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAAAT
Flanking Amino Acid:
MYFDDAHVKEIGPKWKDVVT
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.7
0.44
1
68.8
41
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
59.3
0.37
1.6
76.82
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023807
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032380
4675883 - 4689420
13538