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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4686488_4689330_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4686488 - 4689330
Intron Length:
2843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTTAGTATG
5'SS Class:
major
3'SS Sequence:
TTTAAATCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAT
Flanking Amino Acid:
STMGDLRNCPSNCGEKIRIR
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.2
68
42.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.3
0.55
0.9
70.7
39.6
Minor 5ss
37.9
-1.4
2.7
50.1
39.7
Minor BPS
69
0.67
1.5
84.29
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023807
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032380
4675883 - 4689420
13538