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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_46964_48239_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46964 - 48239
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTTT
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TTTTTCTGCATT
Flanking Amino Acid:
VEEGHLAVYYRGGALLSSPS
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
72.5
39.4
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
80.9
0.69
0.7
73.7
31.4
Minor 5ss
41.7
-0.9
3.6
64.7
46.6
Minor BPS
60.4
0.41
1.9
84.15
37

Associated Gene:

Gene:
ERLIN1
Ensembl Gene ID:
ENSAPLG00000012553
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013083
46851 - 65794
18944