About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4761380_4762240_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4761380 - 4762240
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTATGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCTAT
U12 Branch Point Sequence:
TGTGCGCTAACT
Flanking Amino Acid:
ADFPHYKSFNRTAMPYGGYE
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
61
0.27
1.3
58.7
39.9
Major PPT
72.1
0.5
1
65.8
39.6
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
49.4
0.04
2.4
77.42
44.7

Associated Gene:

Gene:
MYOZ1
Ensembl Gene ID:
ENSAPLG00000025844
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032388
4761148 - 4773351
12204