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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4771359_4771403_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4771359 - 4771403
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAAAGGAG
5'SS Class:
major
3'SS Sequence:
AGGGACACACAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
AGAAAAATAAAT
Flanking Amino Acid:
CICMGEGGIHCFISFWQQHY
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
59.1
42.9
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
44.1
-0.3
1.1
29.3
35.5
Minor 5ss
17.7
-3.7
4
24.5
39.9
Minor BPS
40
-0.6
1.9
54.56
39.2

Associated Gene:

Gene:
MYOZ1
Ensembl Gene ID:
ENSAPLG00000025844
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032388
4761148 - 4773351
12204