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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4784490_4784579_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4784490 - 4784579
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCCTCTTCT
5'SS Class:
weak_major
3'SS Sequence:
TGAGCTTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGCCAT
U12 Branch Point Sequence:
TAAGCCATACCA
Flanking Amino Acid:
LDEPVWRTEMASLGPSPNPA
Intron Amino Acid Position:
886

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.3
54
44.5
Major BPS
48.2
-0.1
1.3
56.2
40.7
Major PPT
68.6
0.42
1.1
65.6
45.2
Minor 5ss
39.7
-1.2
3.8
56.7
42.7
Minor BPS
48.5
-0.1
2
62.5
43.2

Associated Gene:

Gene:
SYNPO2L
Ensembl Gene ID:
ENSAPLG00000006548
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006793
4784364 - 4815977
31614