Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4801600_4802152_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4801600 - 4802152

Intron Length:

553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTGCT

5'SS Class:

strong_major

3'SS Sequence:

GCAAGGTGGCCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGATTAA

U12 Branch Point Sequence:

GAGCCCTGAGCA

Flanking Amino Acid:

SNGTLNIRVKRIAPGSLPRL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

1.1

78.8

35.5

Major BPS

60.4

0.26

1.2

52.1

43.5

Major PPT

47.6

-0.1

1.2

34.4

45.1

Minor 5ss

40.9

-1

3.2

59.5

Minor BPS

48.5

-0.1

1.7

56.49

41.8

Associated Gene:

Gene:

SYNPO2L

Ensembl Gene ID:

ENSAPLG00000006548

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006793

4784364 - 4815977

31614