Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4802305_4815872_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4802305 - 4815872

Intron Length:

13568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGACCG

5'SS Class:

major

3'SS Sequence:

TCTGTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TTACTATCATCC

Flanking Amino Acid:

EQKKPLQVSKIRKRSKACRG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.66

1.1

44.9

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

87.8

0.85

0.8

80.2

37.3

Minor 5ss

30.9

-2.2

3.3

39.5

45.9

Minor BPS

44.4

-0.4

1.9

58.25

Associated Gene:

Gene:

SYNPO2L

Ensembl Gene ID:

ENSAPLG00000006548

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033134

4784364 - 4815977

31614

ENSAPLT00000006793

4784364 - 4815977

31614