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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4829723_4830058_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4829723 - 4830058
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTCTTCTTAAAA
Flanking Amino Acid:
SAPPPAGLGYGPPTSVPPVS
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
68
0.45
1
57.8
39
Major PPT
72.3
0.5
1.1
75.4
32
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
75.3
0.79
1.3
80.08
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442