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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4831903_4834961_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4831903 - 4834961
Intron Length:
3059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGCCTA
5'SS Class:
major
3'SS Sequence:
TCTTCGATCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCTTCGATC
Flanking Amino Acid:
RLDPDSIPSPIQVIEDDRSN
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
62.2
43.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
71.3
0.48
0.9
66.2
34.4
Minor 5ss
44.4
-0.6
3.1
66.5
44.4
Minor BPS
66.4
0.5
1.5
77.57
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442