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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_48322_48796_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48322 - 48796
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTGAGCA
Flanking Amino Acid:
PFITTFKSVQTTLQTDEVKN
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
74.6
37.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.6
0.91
0.7
89.1
25.9
Minor 5ss
30.3
-2.3
2.9
36.8
40.3
Minor BPS
65.8
0.49
1.7
80.11
35.6

Associated Gene:

Gene:
ERLIN1
Ensembl Gene ID:
ENSAPLG00000012553
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013083
46851 - 65794
18944