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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4835074_4835705_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4835074 - 4835705
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTTACTGAAACT
Flanking Amino Acid:
VTTNFLVKDQGNASPRYIRC
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
85.1
0.79
0.8
77
37.3
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
50.8
0.1
2.3
80.13
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442