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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4835834_4838478_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4835834 - 4838478
Intron Length:
2645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ACCTTTTTGATT
Flanking Amino Acid:
KPLATLPPDETLPYLVDHGE
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.3
0.61
0.8
71.6
33
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
59.5
0.38
1.2
67.44
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442