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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4838618_4839730_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4838618 - 4839730
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTACCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTTCTTTACCC
Flanking Amino Acid:
QCCFCSCVTEVPPHYFQHLD
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
83
0.74
0.8
77.2
36.1
Minor 5ss
36.2
-1.6
3.5
48.3
47.3
Minor BPS
76.8
0.82
1.5
85.93
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442