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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4839847_4840167_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4839847 - 4840167
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAG
5'SS Class:
major
3'SS Sequence:
CCTTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
ATGACCTTAATG
Flanking Amino Acid:
EFLATVDYCKNNKFPSPPAF
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.1
41.3
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
80.7
0.69
0.7
75.4
26.7
Minor 5ss
34.4
-1.8
3.5
46
49.3
Minor BPS
69
0.46
1.4
66.59
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442