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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4843011_4843485_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4843011 - 4843485
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AACTTTTGATCT
Flanking Amino Acid:
KKLINTDKEKTLFQPQTSFY
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71
39
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.9
0.69
0.7
80.3
24.9
Minor 5ss
33.9
-1.8
2.8
41.7
44.4
Minor BPS
48.5
-0
1.7
63.67
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442