About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4844513_4844982_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4844513 - 4844982
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGCAT
U12 Branch Point Sequence:
TTTCCTGTATCT
Flanking Amino Acid:
LSEDSGALLQCALLYTSCAG
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
59.9
0.25
1.5
71.4
45.1
Major PPT
88.8
0.87
0.7
84.5
30.4
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
52.9
0.17
2.2
81.06
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442