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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4845122_4845753_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4845122 - 4845753
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TAGCTGTCCATT
Flanking Amino Acid:
DTLINYLAKYAYRGVLNSPV
Intron Amino Acid Position:
879

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.4
40.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.3
0.77
0.8
80.4
31.6
Minor 5ss
34.5
-1.8
3.4
44.3
44.6
Minor BPS
37.7
-0.8
2.3
53.96
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442