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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4846282_4846904_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4846282 - 4846904
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CACTCTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
VFFYPRLLPLTKADVDSDSL
Intron Amino Acid Position:
979

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
60.5
0.24
1
55.4
37.7
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442