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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4847614_4848048_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4847614 - 4848048
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
GTTCTGTTAACT
Flanking Amino Acid:
LQVQRSRYMKLIIVKQEDKL
Intron Amino Acid Position:
1073

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
61.6
0.44
2.1
81.89
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006623
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006936
4823748 - 4848189
24442