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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4866462_4867152_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4866462 - 4867152
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTGTTTTATTT
Flanking Amino Acid:
QVANRRETAGDATCITEMSI
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.3
33.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.4
0.8
0.7
78.2
30.6
Minor 5ss
36.5
-1.5
2.8
45.9
42.3
Minor BPS
55.4
0.25
1.6
72.97
39.1

Associated Gene:

Gene:
CHCHD1
Ensembl Gene ID:
ENSAPLG00000024691
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032827
4866320 - 4868245
1926