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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4879955_4880503_F

Intron Information:

Intron Rank:
3
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
4879955 - 4880503
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGTCCCTC
5'SS Class:
weak_minor
3'SS Sequence:
TTCTGCAACACAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTCTGCAACA
Flanking Amino Acid:
TCNQGSAMAMCVGVPLRLVG
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
46.7
-0.2
1.2
39.7
40.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
68.3
0.41
1
62.1
37.7
Minor 5ss
52.2
0.08
2.7
68.2
43
Minor BPS
58.8
0.27
2.2
79.34
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007195
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007490
4877810 - 4883025
5216