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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4880652_4881460_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4880652 - 4881460
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATATCATTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
CCTTCCTTACTG
Flanking Amino Acid:
AEVVCRQLGLSGNPKALSWA
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
75.1
36
Major BPS
79.4
0.73
1
80.1
32
Major PPT
77.3
0.61
0.9
70.6
39.3
Minor 5ss
40.6
-1
2.8
53.5
43.5
Minor BPS
61
0.21
1.8
62.41
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007195
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007490
4877810 - 4883025
5216