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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_4881640_4881909_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4881640 - 4881909
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATACC
5'SS Class:
major
3'SS Sequence:
CCACCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
TGTTCTCCCACC
Flanking Amino Acid:
DAGVSCDPFTEGTVRLAGGR
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
72.3
37.4
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
72.4
0.51
0.8
65.1
30.3
Minor 5ss
35.3
-1.7
3
46.6
41.7
Minor BPS
45.9
-0.3
2.2
64.1
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007195
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007490
4877810 - 4883025
5216