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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_48844_55140_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48844 - 55140
Intron Length:
6297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATCCATTAACT
Flanking Amino Acid:
DEVKNVPCGTSGGVMIYIDR
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
88.1
28.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.4
0.75
0.7
78.6
28.9
Minor 5ss
45.1
-0.5
3.1
67
44.3
Minor BPS
69.6
0.69
1.6
83.19
36.6

Associated Gene:

Gene:
ERLIN1
Ensembl Gene ID:
ENSAPLG00000012553
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013083
46851 - 65794
18944